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	<title>Extreme Biology Blog &#187; Themes in Biology</title>
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		<title>Themes in Biology &#8211; Regulation (part 2)</title>
		<link>http://missbakersbiologyclass.com/blog/2010/05/04/themes-in-biology-regulation-part-2/</link>
		<comments>http://missbakersbiologyclass.com/blog/2010/05/04/themes-in-biology-regulation-part-2/#comments</comments>
		<pubDate>Tue, 04 May 2010 16:52:45 +0000</pubDate>
		<dc:creator>Karisa</dc:creator>
				<category><![CDATA[AP Biology]]></category>
		<category><![CDATA[Themes in Biology]]></category>

		<guid isPermaLink="false">http://missbakersbiologyclass.com/blog/?p=994</guid>
		<description><![CDATA[Regulation is the adaption of form of an organism or a particular system. Our bodies as well as our environments undergo regulation all the time.  Regulation is a major component of all life functions. Regulation occurs at the molecular, cellular, and organismal levels, as well as to populations, communities, and biospheres. Regulation is a process that is needed for survival among different parts of the biological world. Without regulation a stable environment is impossible to achieve. RNA interference (RNAi) is one of our bodies’ mechanisms for regulating genes. These RNAi molecules are programmed to detect foreign genes, mark them as viruses and destroy them (and anything that looks like them). This RNAi essentially silences specific genes and it is the body’s main way to ward off viruses. This one small mechanism regulates translation, transcription, chromatin structure, cell growth, and genome integrity. RNAi therapy can also reduce viral issues and can be a possible treatment for specific medical issues such as HIV, Cancer, and Arthritis. During the cell cycle, cells undergo regulation, which is crucial to the cells&#8217; survival. Multiple mechanisms in the cell cycle work to restrain or activate cell division. There are checkpoints throughout the cell cycle where the cells are [...]]]></description>
			<content:encoded><![CDATA[<div class="mceTemp">Regulation is the adaption of form of an organism or a particular system. Our bodies as well as our environments undergo regulation all the time.  Regulation is a major component of all life functions. Regulation occurs at the molecular, cellular, and organismal levels, as well as to populations, communities, and biospheres. Regulation is a process that is needed for survival among different parts of the biological world. Without regulation a stable environment is impossible to achieve.</div>
<div class="mceTemp">
<p><a href="http://www.ambion.com/techlib/resources/RNAi/overview/index.html">RNA interference</a> (RNAi) is one of our bodies’ mechanisms for regulating genes. These RNAi molecules are programmed to detect foreign genes, mark them as viruses and destroy them (and anything that looks like them). This RNAi essentially silences specific genes and it is the body’s main way to ward off viruses. This one small mechanism regulates translation, transcription, chromatin structure, cell growth, and genome integrity. RNAi therapy can also reduce viral issues and can be a possible treatment for specific medical issues such as HIV, Cancer, and Arthritis.</p>
<div id="attachment_998" class="wp-caption aligncenter" style="width: 510px"><a href="http://www.flickr.com/photos/micha2305/3971377123/"><img class="size-full wp-image-998" title="3971377123_735b1261c2" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/05/3971377123_735b1261c2.jpg" alt="" width="500" height="306" /></a><p class="wp-caption-text">Photo by Michael Kuhn</p></div>
<p>During the cell cycle, cells undergo regulation, which is crucial to the cells&#8217; survival. Multiple mechanisms in the cell cycle work to restrain or activate cell division. There are checkpoints throughout the cell cycle where the cells are verified for sufficient amounts of nutrients and raw materials to progress through the next stage of the cycle. The three major checkpoints are G1, s, and G2.  Density dependent inhibition is the process in which crowded cells stop dividing. Growth factors also help with regulation. These are proteins released by certain cells that stimulate other cells to divide.</p>
<p>Organisms regulate their body temperature in a way to reach <a href="http://www.biology-online.org/4/1_homeostasis.htm">homeostasis.</a> This regulation is done through <a href="http://www.websters-online-dictionary.org/th/thermoregulation.html">thermoregulation</a>. For example, humans are endotherms who regulate their body temperature internally. When it is hot outside, humans go through a process called vasodilatation in which the capillaries are closer to the skin and it allows for a cooling effect. Humans also use sweating and bathing to reach homeostasis. When a human is cold, the capillaries undergo vasoconstriction in which the blood vessels shrink and have a warming effect.</p>
<p><a href="http://www.biology-online.org/dictionary/Osmoregulation">Osmotic regulation</a> of the blood is also essential for homeostasis. Marine animals are hyposmotic to their environment and they need to regulate the water in their blood, because they are constantly in a watery environment. These fish drink a lot, urinate rarely, and secrete salt through their gills to maintain homeostasis in water.</p>
<p>Regulation of a population occurs naturally and is outlined by Darwin’s focus on <a href="http://www.biology-online.org/4/7_ecosystem_succession.htm">density dependent and density independent</a> factors.  Density dependent factors are directly because the size of the population. Food is a necessity for all animals and if there is not enough to sustain the population, then the population will decrease and become regulated. The predator prey relationship is also a major way for populations to be regulated. When a population increases there is then an increased amount of prey for predators, the predators will eat the prey, regulating the prey population. As all the prey are consumed, there is not enough food for the predators, and the predators will die off. Essentially the prey is also regulating the predator population. Density independent factors can also greatly effect and regulate a population. These factors included natural disasters like fire or floods that can harm a population.</p>
<p>Communities also experience regulation. A community is two or more populations living close enough together for a potential interaction. Interspecific interactions link species in a community. This regulates members of a community because the two species compete for resources and the result is detrimental to both of the species. The competitive exclusion principle also regulates communities. Two species with similar needs for the same living resource cannot coexists in the same place or occupy the same <a href="http://www.biology-online.org/dictionary/Niche">niche</a>. </p>
<p>The entire<a href="http://www.kheper.net/tropics/Gaia/Gaia_Hypothesis.htm"> biosphere</a> also undergoes regulation to reach homeostasis. This is achieved through feedbacks. For example, when carbon dioxide levels in the atmosphere rise plants are able to grow better and then remove more carbon dioxide from the atmosphere. The Gaia principle is a hypothesis that states that the entire biosphere is working in junction to maintain climate and biochemical conditions to maintain a homeotic state.  This principle regards everything on earth, creating the biosphere, as a single organism working to regulate earth.  Another example of this hypothesis includes Dimethyl Sulfide Production. Phytoplankton produces this dimethyl sulfide, which they release into the air. This sulfide is then converted into sulfuric acid, which become nuclei for cloud condensation. This produces thicker clouds, which blocks the sun and cools the water.</p>
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		<title>Themes in Biology &#8211; Regulation</title>
		<link>http://missbakersbiologyclass.com/blog/2010/05/03/themes-in-biology-regulation/</link>
		<comments>http://missbakersbiologyclass.com/blog/2010/05/03/themes-in-biology-regulation/#comments</comments>
		<pubDate>Mon, 03 May 2010 16:34:31 +0000</pubDate>
		<dc:creator>Andrew</dc:creator>
				<category><![CDATA[AP Biology]]></category>
		<category><![CDATA[Themes in Biology]]></category>

		<guid isPermaLink="false">http://missbakersbiologyclass.com/blog/?p=964</guid>
		<description><![CDATA[Regulation, by definition, is the adaptation of form or behavior of an organism to changed conditions. Molecular Level – Operon The operon is a region of bacterial DNA that regulates gene expression in bacteria. The operon consists of four major parts: structural genes, regulatory gene, the promoter gene, and the operator. Structural genes are genes that code for enzymes needed in a chemical reaction and these genes will be transcribed at the same time to produce specific enzymes. The regulatory gene codes for a specific regulatory protein called the repressor, which is capable of attaching to the operator and blocking transcription. The promoter gene is the region where the RNA polymerase binds to begin transcription. The operator is the region that controls whether or not transcription will occur.   Cellular Level – Nucleus The nucleus is considered to be the control center of the cell; it controls everything that occurs inside the cell, including the cell’s ability to reproduce. The nucleus is also the home to the cell’s DNA, which is packaged into chromosomes. It is found in the cells of all multicellular living things such as: plants and animals. Organismal Level – Pituitary Gland The pituitary gland is in [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.biology-online.org/dictionary/Regulation">Regulation</a>, by definition, is the adaptation of form or behavior of an organism to changed conditions.</p>
<p><strong>Molecular Level – Operon</strong></p>
<p>The <a href="http://www.emc.maricopa.edu/faculty/farabee/BIOBK/BioBookGENCTRL.html">operon</a> is a region of bacterial DNA that regulates gene expression in bacteria. The operon consists of four major parts: structural genes, regulatory gene, the promoter gene, and the operator. <a href="http://www.biology-online.org/3/2_gene_action.htm">Structural genes</a> are genes that code for enzymes needed in a chemical reaction and these genes will be transcribed at the same time to produce specific enzymes. The regulatory gene codes for a specific regulatory protein called the repressor, which is capable of attaching to the operator and blocking transcription. The promoter gene is the region where the RNA polymerase binds to begin transcription. The operator is the region that controls whether or not transcription will occur.</p>
<p><a href="http://1.bp.blogspot.com/_NHHTvTVxCmc/SwtVnJU_dPI/AAAAAAAAAfc/1qzbX8spyDw/s1600/lac-operon.gif"></a><a href="http://1.bp.blogspot.com/_NHHTvTVxCmc/SwtVnJU_dPI/AAAAAAAAAfc/1qzbX8spyDw/s1600/lac-operon.gif"><img class="aligncenter size-large wp-image-969" title="lac-operon" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/05/lac-operon-1023x758.gif" alt="" width="519" height="519" /></a><br />
 <br />
<strong>Cellular Level – Nucleus</strong></p>
<p>The <a href="http://biology.about.com/od/cellanatomy/p/nucleus.htm">nucleus</a> is considered to be the control center of the cell; it controls everything that occurs inside the cell, including the cell’s ability to reproduce. The nucleus is also the home to the cell’s DNA, which is packaged into chromosomes. It is found in the cells of all multicellular living things such as: plants and animals.</p>
<div id="attachment_971" class="wp-caption aligncenter" style="width: 276px"><a href="http://www.flickr.com/photos/biologyflashcards/3439720536/"><img class="size-medium wp-image-971 " title="3439720536_ec8c4e5085" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/05/3439720536_ec8c4e5085-210x300.jpg" alt="" width="266" height="343" /></a><p class="wp-caption-text">Photo by Biology Flashcards</p></div>
<p><strong>Organismal Level – Pituitary Gland</strong></p>
<p>The <a href="http://www.emc.maricopa.edu/faculty/farabee/BIOBK/BioBookENDOCR.html">pituitary gland</a> is in charge of releasing many hormones that reach other glands to stimulate and secrete their hormones. The pituitary gland has two parts: the anterior and the posterior, each with their own set of hormones.</p>
<p>The anterior pituitary secretes six hormones, three for regulating growth and three for regulating the reproductive systems. The six hormones include: the growth hormone (GH), the adrenocorticotropic hormone (ACTH), thyroid-stimulating hormone (TSH), follicle-stimulating hormone (FSH), luteinizing hormone (LH), and prolactin. GH stimulates the growth throughout the body, specifically targeting bones and muscles. ACTH is the hormone that stimulates the adrenal cortex to secrete glucocorticoids and mineralocorticoids. Lastly, TSH stimulates the thyroid to secrete thyroxine. FSH stimulates follicle to grow in females and spermatogenesis in males. The anterior pituitary is actually regulated by the hypothalamus.</p>
<p>The posterior pituitary, secretes only two hormones: the antidiuretic hormone also known as vasopressin as well as the hormone oxytocin. The antidiuretic hormone regulates the water intake by nephrons. Oxytocin stimulates the contraction of the uterus and the ducts of the mammary glands.  </p>
<div id="attachment_973" class="wp-caption aligncenter" style="width: 310px"><a href="http://www.flickr.com/photos/reighleblanc/3854684694/"><img class="size-medium wp-image-973" title="3854684694_853f9a0e2b" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/05/3854684694_853f9a0e2b-300x300.jpg" alt="" width="300" height="300" /></a><p class="wp-caption-text">Photo by Reigh LeBlanc</p></div>
<p><strong>Populations – Hardy Weinberg</strong></p>
<p>The <a href="http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/H/Hardy_Weinberg.html">Hardy-Weinberg law</a> states that even with all the shuffling of genes that occur, the approximate frequencies of genotypes in a population still prevail over time. The frequency of alleles is depicted in this equation: p + q = 1. This can also be calculated by determining the frequency of the genotypes in a population using the equation: p^2+2pq+ q^2. In these equations, p stands for dominant allele, while q is for the recessive. The law states that populations will be in genetic equilibrium only if it meets the five conditions: there is a large population, there are no mutations, no immigration or emigration occurs, random mating occurs, and that no natural selection occurs. Through this, the Hardy-Weinberg Law regulates variation in a population.</p>
<p style="text-align: center;"><a href="http://cnho.files.wordpress.com/2009/11/ley-de-hardy-weinberg.gif"><img class="size-medium wp-image-975 aligncenter" title="ley-de-hardy-weinberg" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/05/ley-de-hardy-weinberg-300x217.gif" alt="" width="300" height="217" /></a></p>
<p><strong>Population – Growth Characteristics</strong></p>
<p>There are two different types of <a href="http://animals.about.com/cs/zoology/a/zoo101ae.htm">population growth and regulation</a>, r-selected and k-selected. The characteristics of r-selected growth include: late maturation, fewer offspring, larger young, longer life spans, more parental care and intense competition for resources. Then there is also the is the K-selected population, whose characteristics include: early maturation, a large number of offspring, smaller young, shorter life spans, less parental care and little competition for resources. Still though, biological and environmental factors can affect these characteristics. These two regulate the growth of an animal.</p>
<div id="attachment_976" class="wp-caption aligncenter" style="width: 160px"><a href="http://www.flickr.com/photos/duncan/89777725/"><img class="size-thumbnail wp-image-976" title="89777725_239b819408" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/05/89777725_239b819408-150x150.jpg" alt="" width="150" height="150" /></a><p class="wp-caption-text">Photo by Duncan</p></div>
<div id="attachment_977" class="wp-caption aligncenter" style="width: 160px"><a href="http://www.flickr.com/photos/lwr/7235902/"><img class="size-thumbnail wp-image-977" title="7235902_51a0cdff54" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/05/7235902_51a0cdff54-150x150.jpg" alt="" width="150" height="150" /></a><p class="wp-caption-text">Photo by Leo Reynold</p></div>
<p><strong>Community Level – Decomposers</strong></p>
<p>Decomposers are organisms that break down organic matter into simple products. The most common decomposers are fungi and bacteria and they serve basically as the “garbage collectors” of the community. Eventually in a community everybody will yield to a decomposer. Now, the reason this has to do with regulation is that decomposers regulate or help clean up our communities, making them capable of living comfortably in them.</p>
<div id="attachment_979" class="wp-caption aligncenter" style="width: 310px"><a href="http://www.flickr.com/photos/digitalcolony/3317136736/"><img class="size-medium wp-image-979" title="3317136736_c7f579d7d9" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/05/3317136736_c7f579d7d9-300x225.jpg" alt="" width="300" height="225" /></a><p class="wp-caption-text">Photo by I Need Coffee</p></div>
<p><strong>Biosphere – Ozone Layer</strong></p>
<p>The ozone layer is a layer in the earth’s atmosphere made up of O3 that absorbs 93 to 99 percent of the sun&#8217;s ultraviolet rays, thus protecting us from them. The ozone layer is mainly located in the stratosphere and the thickness of the layer depends on the area on earth.</p>
<div id="attachment_980" class="wp-caption aligncenter" style="width: 310px"><a href="http://www.flickr.com/photos/gsfc/3927062424/"><img class="size-medium wp-image-980" title="3927062424_ba6396a4f8" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/05/3927062424_ba6396a4f8-300x300.jpg" alt="" width="300" height="300" /></a><p class="wp-caption-text">Photo by Nasa Goddard Photo and Video</p></div>
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		<title>Themes in Biology &#8211; Science as a Process</title>
		<link>http://missbakersbiologyclass.com/blog/2010/04/26/themes-in-biology-science-as-a-process/</link>
		<comments>http://missbakersbiologyclass.com/blog/2010/04/26/themes-in-biology-science-as-a-process/#comments</comments>
		<pubDate>Mon, 26 Apr 2010 16:29:17 +0000</pubDate>
		<dc:creator>Sean</dc:creator>
				<category><![CDATA[AP Biology]]></category>
		<category><![CDATA[Themes in Biology]]></category>

		<guid isPermaLink="false">http://missbakersbiologyclass.com/blog/?p=939</guid>
		<description><![CDATA[Science is a process which encompasses many methods in order to reach a final conclusion. An inference is defined as the reasoning involved in drawing a conclusion or making a logical judgment on the basis of circumstantial evidence and prior conclusions. Inference is a key part of the process of science. Much of the science we know is based on inference instead of actual observation. No person for example, has seen the inside of an atom. But, through inference and other methods of scientific research, we know what the inside of an atom looks like and what the atom is made of. Testing and observing are key parts of science as a process. Scientific ideas and conclusions are evaluated by studying and observing the different tests used to in order to come to that certain conclusion. These tests can be anything from a controlled lab experiment to observations of stars through a telescope. Hypothesizing is another key part to science as a process. Every experiment starts with the scientist hypothesizing the outcome of the experiment. This hypothesis is then proven correct or incorrect after the results of the experiment are carefully analyzed. Lastly, peer review is very necessary in science. [...]]]></description>
			<content:encoded><![CDATA[<p>Science is a process which encompasses many methods in order to reach a final conclusion. An inference is defined as the reasoning involved in drawing a conclusion or making a logical judgment on the basis of circumstantial evidence and prior conclusions. Inference is a key part of the process of science. Much of the science we know is based on inference instead of actual observation. No person for example, has seen the inside of an atom. But, through inference and other methods of scientific research, we know what the inside of an atom looks like and what the atom is made of. Testing and observing are key parts of science as a process. Scientific ideas and conclusions are evaluated by studying and observing the different tests used to in order to come to that certain conclusion. These tests can be anything from a controlled lab experiment to observations of stars through a telescope. Hypothesizing is another key part to science as a process. Every experiment starts with the scientist hypothesizing the outcome of the experiment. This hypothesis is then proven correct or incorrect after the results of the experiment are carefully analyzed. Lastly, peer review is very necessary in science. After an experiment or observation is conducted, other scientists will review the experiment in order to learn from it and to make sure it was conducted and analyzed correctly.</p>
<div id="attachment_942" class="wp-caption alignleft" style="width: 260px"><a href="http://www.flickr.com/photos/cstmweb/3885088848/sizes/o/"><img class="size-full wp-image-942 " title="3885088848_2bc3714f28_o" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/3885088848_2bc3714f28_o.gif" alt="" width="250" height="189" /></a><p class="wp-caption-text">Photo by cstmweb</p></div>
<p>In a sequence of experiments from 1909 to 1911, <a href="http://nobelprize.org/nobel_prizes/chemistry/laureates/1908/rutherford-bio.html">Ernest Rutherford</a> discovered that the majority of an atoms weight was concentrated in the center called the nucleus. He discovered this by completing and analyzing a <a href="http://www.rsc.org/chemsoc/timeline/pages/1911.html">gold foil experiment</a>. Rutherford fired alpha particles, relatively massless particles consisting of two protons and two neutrons, at a thin sheet of gold foil. Rutherford wanted to measure how much the alpha particles were deflected because the alpha particles have a positive charge and the electrons have a negative charge. The electrons were expected to slightly alter the trajectory of the fired alpha particles. Contrary to Rutherford’s hypothesis, the alpha particles were hardly deflected. After analyzing the experiment, Rutherford concluded that the mass of the atom was not evenly distributed as previously thought. The mass of the atom, in fact, was highest in the center of the atom called the nucleus. Rutherford’s hypothesis for this experiment was disproved, a key part of Science as a process. It is acceptable in science to hypothesize incorrectly as long as you can explain the correct outcome of the experiment.</p>
<div id="attachment_943" class="wp-caption alignright" style="width: 384px"><a href="http://www.flickr.com/photos/wunderkanone/4147590242/"><img class="size-full wp-image-943" title="4147590242_b7d801ef8a" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/4147590242_b7d801ef8a.jpg" alt="" width="374" height="280" /></a><p class="wp-caption-text">Tangerine fruit stalk; Photo by Tatcher a Hainu</p></div>
<p> In 1838, <a href="http://scienceworld.wolfram.com/biography/Schwann.html">Theodor Schwann</a> and <a href="http://home.datacomm.ch/biografien/biografien/schleiden.htm"><span style="text-decoration: underline;">Matthias Schleiden</span></a> were sitting together speaking about their study of cells. Schleiden described plant cells as having a nucleus in the center. This directly correlated with Schwann’s observation of animal cells. The two immediately looked at each others slides and came up with a <a href="http://www.bio.miami.edu/~cmallery/150/unity/cell.text.htm">cell theory</a> which stated:</p>
<p>1) The cell is the unit of structure, physiology, and organization in living things.   </p>
<p>2) The cell retains a dual existence as a distinct entity and a building block in the construction of organisms.</p>
<p>3) Cells form by free-cell formation, similar to the formation of crystals (spontaneous generation).</p>
<p>In this case, Schwann and Schleiden used many different processes of Science. They Experimented, inferred, and collaborated in order to come to their conclusion.</p>
<div id="attachment_944" class="wp-caption alignleft" style="width: 227px"><a href="http://www.flickr.com/photos/vanderkroew/3617385206/"><img class="size-full wp-image-944" title="3617385206_ca140d233d" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/3617385206_ca140d233d.jpg" alt="" width="217" height="320" /></a><p class="wp-caption-text">Louis Pasteur; Photo by Euclid vanderKroew</p></div>
<p><a href="http://www.biography.com/articles/Louis-Pasteur-9434402">Louis Pasteur</a>, a French scientist, disproved the theory of spontaneous generation. This theory stated that living organisms could be made from non-living matter. In order to disprove this, Pasteur boiled meat broth into a flask and shaped the flask into an S shape. Air could enter the S shaped flask, but small microorganisms could not. After many days, as expected by Pasteur, no organisms grew in the broth. In the broth that Pasteur left in a regular open flask, however, organisms grew. <a href="http://www.accessexcellence.org/RC/AB/BC/Spontaneous_Generation.php">This proved</a> that organisms couldn’t just appear. Pasteur hypothesized correctly and accurately conducted an experiment to prove his hypothesis. This was one of the landmark experiments at the time, disproving a common theory.</p>
<p><a href="http://www.flickr.com/photos/robfon/2358526180/"></a></p>
<div id="attachment_946" class="wp-caption alignleft" style="width: 454px"><a href="http://www.flickr.com/photos/robfon/2358526180/"><img class="size-full wp-image-946 " title="2358526180_584d051446" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/2358526180_584d051446.jpg" alt="" width="444" height="352" /></a><p class="wp-caption-text">Photo by Roberto F</p></div>
<p><a href="http://nobelprize.org/nobel_prizes/medicine/laureates/1973/frisch-autobio.html">Karl von Frisch</a>, an Austrian ethologist, studied honeybees and showed that they use dance to communicate food locations to other bees. Von Frisch noticed that when one honeybee found food, others appeared around the food. He then studied the bee’s movements when it found the food. <a href="http://www.animalbehavioronline.com/frisch.html">He observed</a> two different movements or dances. A round dance, which tells other bees to search for food close to the hive and a waggle dance which told other bees the direction and distance to fly toward the food. This study on a population of honeybees helped scientists further understand the movement and food searching methods of the bees. Von Frisch mainly used the scientific process of observation and analysis to reach his conclusions on honeybee dances.</p>
<div id="attachment_947" class="wp-caption alignright" style="width: 385px"><a href="http://www.flickr.com/photos/storm-crypt/1442412437/"><img class="size-full wp-image-947" title="1442412437_222dcf813d" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/1442412437_222dcf813d.jpg" alt="" width="375" height="283" /></a><p class="wp-caption-text">Photo by Storm Crypt</p></div>
<p>Recently, Harvard University has conducted <a href="http://harvardforest.fas.harvard.edu/research/invasives.html">studies</a> on invading, nonnative plant species, especially those in Massachusetts. The <em><a href="http://plants.usda.gov/java/profile?symbol=ALPE4">Alliaria petiolata</a>, </em>a common invader in Massachusetts’s forests. This plant threatens other local plants such as sugar maple and breech in the forest. They also studied that the <em>Alliaria petiolata </em>spreads in low light areas. The study of the population of plants in Massachusetts forests help Harvard scientists figure out how to get the nonnative species out and how to help the native plants survive. These scientists observed the plants for hours in order to come up with a hypothesis on what the invading species is doing and a way to help the native species survive.</p>
<p><a href="http://www.flickr.com/photos/venosdale/4538665373/"></a></p>
<div id="attachment_948" class="wp-caption alignleft" style="width: 349px"><a href="http://www.flickr.com/photos/venosdale/4538665373/"><img class="size-full wp-image-948" title="4538665373_cc03a39920" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/4538665373_cc03a39920.jpg" alt="" width="339" height="266" /></a><p class="wp-caption-text">Photo by KTVee</p></div>
<p>In 1988 <a href="http://www.kheper.net/topics/Gaia/Lovelock.htm">James Lovelock</a> published a book speaking about his Gaia hypothesis. This hypothesizes that all living things have a regulatory effect on the earth’s environment that promotes life. Lovelock came upon this hypothesis while looking at the atmosphere of Mars in its equilibrium. He analyzed that the earth’s atmosphere was never in equilibrium. This highly controversial hypothesis has not been proven. Most scientific discoveries start out as unproven hypothesis. Scientists then conduct experiments to prove or disprove hypothesis and eventually come to a final conclusion.</p>
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		<title>Themes in Biology &#8211; Evolution</title>
		<link>http://missbakersbiologyclass.com/blog/2008/05/07/themes-in-biology-evolution/</link>
		<comments>http://missbakersbiologyclass.com/blog/2008/05/07/themes-in-biology-evolution/#comments</comments>
		<pubDate>Wed, 07 May 2008 13:14:19 +0000</pubDate>
		<dc:creator>Lauren</dc:creator>
				<category><![CDATA[AP Biology]]></category>
		<category><![CDATA[Themes in Biology]]></category>

		<guid isPermaLink="false">http://missbakersbiologyclass.com/blog/?p=922</guid>
		<description><![CDATA[Evolution is arguably the most central theme in biology because it ties all other major themes together. Evolution is defined as a change in alleles in a population over time. In each level of life, there is evidence of evolution on a population through natural selection on individuals. Darwin, credited as the founder of modern evolutionary theory, made four main points in his book that described how natural selection works: 1.Each species produces more offspring than can survive. 2.These offspring must compete with each other for limited resources required to survive. 3.Organisms in all populations vary in alleles and are different. 4.The individuals with the most favorable traits or variations are the most likely to survive and therefore produce more offspring. Molecular Genes are the units that help code for proteins within an organism. Evolution has seen the selection of specific genes that code for specific proteins over less desirable genes. For instance, the gene that codes for blindness in the blind cavefish is chosen over the gene for eyesight. The reason for this is that one of the two genes involved in senses of the fish must be traded for the others. In easier terms, the eyesight of the [...]]]></description>
			<content:encoded><![CDATA[<p>Evolution is arguably the most central theme in biology because it ties all other major themes together. Evolution is defined as a change in alleles in a population over time. In each level of life, there is evidence of evolution on a population through natural selection on individuals. Darwin, credited as the founder of modern evolutionary theory, made four main points in his book that described how natural selection works:</p>
<p>1.Each species produces more offspring than can survive.<br />
2.These offspring must compete with each other for limited resources required to survive.<br />
3.Organisms in all populations vary in alleles and are different.<br />
4.The individuals with the most favorable traits or variations are the most likely to survive and therefore produce more offspring.</p>
<p><strong>Molecular</strong></p>
<p>Genes are the units that help code for proteins within an organism. Evolution has seen the selection of specific genes that code for specific proteins over less desirable genes. For instance, the gene that codes for blindness in the <a href="http://seedmagazine.com/news/2007/01/of_cavefish_and_hedgehogs.php">blind cavefish</a> is chosen over the gene for eyesight. The reason for this is that one of the two genes involved in senses of the fish must be traded for the others. In easier terms, the eyesight of the fish must be sacrificed so that the jaw and taste buds can develop. In this case, the pleitrophy gene that controls this development is slightly inhibited by another gene. The only reason the inhibiting gene is selected is because while it inhibits eyesight, the fish can rely on its other sensory organs, which proves to be successful.</p>
<p><strong>Cellular</strong></p>
<div id="attachment_924" class="wp-caption alignnone" style="width: 510px"><a href="http://www.flickr.com/photos/akay/245554548/"><img class="size-full wp-image-924" title="245554548_bc9a6596af" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/245554548_bc9a6596af.jpg" alt="" width="500" height="336" /></a><p class="wp-caption-text">Photo by Akay</p></div>
<p>On a cellular level, eukaryotic cells are complex in comparison to prokaryotic cells. According to the endosymbiotic theory, the evolution of <a href="http://en.wikipedia.org/wiki/Endosymbiotic_theory">organelles</a> originated from a prokaryotic cell that joined with separate prokaryotic cells. The organelles in the cell proved to be exceptionally helpful, such as the mitochondria, which supplied it with energy. The earliest mitochondrion is believed to have begun as a very primitive bacterium. With a source of internal energy, the eukaryotic cell was more favorable and through natural selection, became more frequent.</p>
<p><strong>Organismal</strong></p>
<div id="attachment_926" class="wp-caption alignnone" style="width: 510px"><a href="http://www.flickr.com/photos/kaptainkobold/273001185/"><img class="size-full wp-image-926" title="273001185_1f8fd6254b" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/273001185_1f8fd6254b.jpg" alt="" width="500" height="485" /></a><p class="wp-caption-text">Photo by Kaptain Kobold</p></div>
<p>The kidneys are responsible for filtering the wastes of the blood and reabsorbing nutrients during the process. Some animals have evolved to have excretory systems to compliment the environment that they live in. For instance, in dry and arid environments, many animals have an extra complex <a href="http://www.guidolivolsi.it/Osmoregulation_and_Excretion.pdf">collecting duct</a>, where the most water is reabsorbed during excretion, to maximize the amount of water conserved. Those organisms that have the systems to do this can survive longer and are favorable to the environment because of their success in retaining water, which is a necessity in their environment.</p>
<p><strong>Population</strong></p>
<div id="attachment_927" class="wp-caption alignnone" style="width: 510px"><a href="http://www.flickr.com/photos/kaibara/2234750993/"><img class="size-full wp-image-927" title="2234750993_66e2a59f4d" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/2234750993_66e2a59f4d.jpg" alt="" width="500" height="500" /></a><p class="wp-caption-text">Photo by Kaibara</p></div>
<p>One of the easiest examples to observe since it reproduces so quickly, <a href="http://whyfiles.org/038badbugs/mechanism.html">bacteria</a> helps explain genetic drift in populations. If you were to put a culture of bacteria in a nutrient rich environment, they would reproduce. But if you added an antibiotic into the environment that killed most of the bacteria, only the bacteria that had alleles that made them resistant to the antibiotic would survive. Since the bacteria that died did not have a high fitness, they were not able to continue contributing their genes to the pool. Only the surviving bacteria will be able to pass on their genes, which include resistance. This, in time, will lead to a whole generation of antibiotic resistant bacteria that has evolved from the original population to one made of resistant genes.</p>
<p><strong>Community</strong></p>
<div id="attachment_929" class="wp-caption alignnone" style="width: 510px"><a href="http://www.flickr.com/photos/thomashawk/408295066/"><img class="size-full wp-image-929" title="408295066_538d649bb5" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/408295066_538d649bb5.jpg" alt="" width="500" height="333" /></a><p class="wp-caption-text">Photo by Thomas Hawk</p></div>
<p>The <a href="http://necsi.org/projects/evolution/co-evolution/pred-prey/co-evolution_predator.html">predators</a> and prey evolve together, the prey trying to stay one step ahead of the predator, and the predator trying to catch up. In the case of wolves and rabbits, wolves evolve mechanisms to help them survive by obtaining food such as speed, stealth, camouflage, and excellent sensory senses. Likewise, the prey, rabbits, develop similar mechanisms to aid in avoidance and escape of a predator. Any trait such as long legs to run or hop faster will enable the prey to escape its predator, and pass its genes to its offspring. Those that are eaten obviously were not fit to their environment and their genes, which did not help them, will not be passed on.</p>
<p><strong>Biosphere</strong></p>
<div id="attachment_930" class="wp-caption alignnone" style="width: 510px"><a href="http://www.flickr.com/photos/brentdanley/1876779218/"><img class="size-full wp-image-930" title="1876779218_dc4a307f6b" src="http://missbakersbiologyclass.com/blog/wp-content/uploads/2010/04/1876779218_dc4a307f6b.jpg" alt="" width="500" height="349" /></a><p class="wp-caption-text">Photo by Brent Danley</p></div>
<p>The globe is made up of many different climates and geographic features, each factors of a specific biome. With in a <a href="http://actazool.nhmus.hu/48Suppl2/manseras.pdf">biome</a>, an ecosystem of organisms exists which specifically suit that particular biome. Producers within the biome have evolved features that give them high evolutionary fitness. The consumers that feed off of these producers are also well suited to their biome, as discussed in population. With the combination of all of the organisms well suited to their environment in one biome, there is an ecosystem that is specifically designed to survive there. If you were to take a kangaroo and place it in the arctic, the kangaroo would not be able to find the resources it needs to survive. The food that it lives off of, the habitat it is used to and the mates it needs to reproduce are not there. That is why each biome is made up of biotic and abiotic factors that specially suit the surrounding ecosystem.</p>
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